Comment only 26 Jan 2010 Jimmy Shen Jimmy Shen (view profile) 5 files 744 downloads 4.53839 Hi Anne-Lene: Don't worry. By start position, I mean the origin (x,y,z). Apply your transformation matrix, and save new_xyz into a new image: new_xyz=T*old_xyz; rl.hdr.hist.srow_x(1:3)=new_xyz(1,:); rl.hdr.hist.srow_y(1:3)=new_xyz(2,:); rl.hdr.hist.srow_z(1:3)=new_xyz(3,:); save_untouch_nii(rl, 'rl30.nii'); Now you already have the "rl30.nii", which is a transformed NIfTI image can be Please welcome our newest member: serenitynow. navigate here
Can't not open Japanese or Simplified Chinese "File name" Batch Rename instructions and interface too difficult More than one screenshot per second? PLEASE DO NOT SEND BY EMAIL ATTACHMENT. I must use load_untouch_nii, however, when I use this, the NIFTIs are in a random spatial orientation, with the image matrix needing to be flipped and/or rotated to be in correct Perhaps you have a new money making idea? http://www.dmxzone.com/forum/topic/19153/
Type help make_nii for more details. Did you receive any error message? In your case, if you want to concatenate two 4D NIfTI images into one 4D NIfTI images, you should apply "expand_nii_scan" to your both 4D images.
Here is where you can get scripts, graphics and forum code for your Snitz Forum. e.g.: nii= D2N('SRC_folder','full_path\output_name') it seems there are many out there but each use a different format for loading into matlab. I have a question regarding extracting data from a ROI: I have T1 maps in 4-dimensional (X,Y, slices, time) (in .nii format) and volume of interest files (in .nii format). Thanks a lot.
SPM), they will also reslice it for you. NOTE: We currently donīt support this feature. 2 25 04 December 2001 10:37:20by:Fez DEV Discussions (DB2) This is the place to discuss converting this forum over to use a DB2 loads fast, exits slow converting pdf files Signature Tif/Tiff Maybe my needs aren't so simple... http://reboot.sitotop.com/ntvdm/msi-error-1612.html added option to import MT3DMS results, .UCN file added GUI shortcut to Define New Pumping Wells, at the Define Boundary Conditions step in the numerical model workflow.
Please check http://www.mathworks.com/matlabcentral/fileexchange/47072-3d-nifti-data-viewer 20 Jun 2014 Christian Christian (view profile) 0 files 0 downloads 0.0 20 Jun 2014 Christian Christian (view profile) 0 files 0 downloads 0.0 thank you very Thank you for this toolkit.. My problem is once I convert this 3D matrix to ANALYZE format using make_ana command, I get the brain volume that is rotated/flipped w.r.t the original volume. Show/hide caption (or really file name?) Can't create very large slideshow EXE files Powered by vBulletin Version 4.2.3 Copyright © 2016 vBulletin Solutions, Inc.
If you have further question, please be more specific (e.g. visit thank for your time. EXIF info keeps coming up Where is Irfanview Most recently used directory ? So please save it in .hdr/.img or .nii format before you open them in MATLAB. 2) 300 slices should be okay on many new computers.
I updated it a little bit and added a few new features. check over here nii = load_untouch_nii('foo.nii'); data = nii.img; %data = data + 10; nii_mod = make_nii(data); %nii_mod.hdr = nii.hdr; save_untouch_nii(nii_mod,'test1.nii'); Comment only 15 Apr 2012 Andrew Davis Andrew Davis (view profile) 10 files WARNING: Do not use "view_nii.m" to view the structure that is loaded by "load_untouch_nii.m". 11. I am not really sure if anyone has the same issue, anyone has any idea how I could fix this?
collapse_nii_scan.m: Integrate multiple single-scan NIfTI or ANALYZE files into a multiple-scan NIfTI file. 2. ignore certain file types strange icon Thumbnails Crash CGM graphic PDF won't open Remembering slideshow files Strange Problem Technical question how to set IrfanView to view pic as 25% of size? I can see that GMax of the output image is 5. http://birdsallgraphics.com/error-cannot/error-cannot-load-resource-file-maplestory.php I am able to save this NII but no external programs other than Matlab are able to read it.
You can set it to 0, you will be prompted to use "reslice_nii" to interpolate the image. save_untouch_slice.m: Save back to the original image with a portion of slices that was loaded by load_untouch_nii. I tried opening the files in both PMOD and in freeview, but the origin/orientation, or some parameters that determine spatial location seem to be changed, but I did not change the
Comment only 10 Jul 2012 Jimmy Shen Jimmy Shen (view profile) 5 files 744 downloads 4.53839 Would you please send me this image, so I can take a look into it save_nii_ext(ext, fid)Save NIFTI header extension. All you have to do is to hide the background image and the axes before you export the plot to an image. I am not sure if I can use "reslice_nii" because I still need this mask file to have the same dimensions as my functional file.
color palette Capture/Screenshot - Fullscreen IrfanView and RTF files "Negative Crop" (padding) is it possible? If your problem is not specific to NT Authentication, please post to the "GENERAL" support forum. 4 29 04 May 2012 09:55:31by:Carefree Help: General / Current Version (Old) This Forum Comment only 05 Jul 2013 Jimmy Shen Jimmy Shen (view profile) 5 files 744 downloads 4.53839 Data for "plot" only contain the coordinates information, while data for "make_nii" need intensity value weblink Finally, I have to correct you that "make_nii" will not convert image to any extension.
Don't click "interp on/off" menu. But the image dimensions remained the same. How can I edit a tiff file??? Cannot install Copy Shop scan resolution settings cause print failure??
Mostly old (pre v4b04) bugfixes and Q&A's. 376 2134 30 September 2002 19:32:59by:Deleted DEV Discussions (General) This is a place for General Forum Development questions and discussions. 60 645 26 voxel_size, origin, etc.). For such a file, I cannot image any software can process it. Now it does not have the background and axes.
The relative composite sensitivity of a log-transformed parameter is determined by mutiplying the composite sensitivity of that parameter by the absolute log of the value of that parameter. EMF files - poor resolution IrfanView and BartPE Get image dimensions from command line Irfanview on Windows Vista Home Premium How to resize a jpg file Drag and drop - move exception occurs during "Edit Grid" step (refine rows/cols), if you set End row to be the last row. Most help can be obtained by using help command.
The "nii.hdr" is the header information to describe how "nii.img" is oriented, what is the voxel size, and originator, and many more. Many Thanks. 17 May 2016 Elijah Rockers Elijah Rockers (view profile) 0 files 0 downloads 0.0 Same problem as cindy. Comment only 31 Aug 2011 Priya Priya (view profile) 0 files 0 downloads 0.0 Hi I am using Tools for NIfTI and ANALYZE image. You can use my tool to look at NIfTI images separately and also convert them to another datatype.
I tried to run it on three different PC with ubuntu. For example, after I've loaded my DWI with load_nii() the following are: >> rot_orient: [1 2 3] flip_orient: [3 0 0] How can I use these fields to change flip/permute bvectors